Sequence assembly and manipulation. Sequence assembly and manipulation tools including: EditSeq, EditRna, EditSeqDup, EditRnaDup, EditSeqReg, and EditRnaReg. EditSeq and EditRna are the building blocks of SeqPup’s sequence assembly and manipulation tools. EditSeq and EditRna are extended tools for the manipulation of sequences. SeqPup is the biological sequence analysis and manipulation tool of choice.
Sequence Manipulation:
EditSeq:
“EditSeq” is a sequence manipulation program. “EditSeq” is a tool for viewing and manipulating sequences.
Edits:
“EditSeq” is a sequence manipulation program. “EditSeq” is a tool for viewing and manipulating sequences. “EditSeq” is the primary sequence manipulation tool in SeqPup.
EditRna:
“EditRna” is a sequence manipulation program. “EditRna” is a tool for viewing and manipulating DNA and RNA sequences.
EditRnaDup:
“EditRna” is a sequence manipulation program. “EditRna” is a tool for viewing and manipulating DNA and RNA sequences. “EditRna” is the primary sequence manipulation tool in SeqPup.
EditSeqReg:
“EditSeqReg” is a sequence manipulation program. “EditSeqReg” is a tool for viewing and manipulating DNA and RNA sequences.
EditRnaReg:
“EditRnaReg” is a sequence manipulation program. “EditRnaReg” is a tool for viewing and manipulating DNA and RNA sequences.
Edits:
“EditSeq” is a sequence manipulation program. “EditSeq” is a tool for viewing and manipulating sequences. “EditSeq” is the primary sequence manipulation tool in SeqPup.
Network Services:
The SeqPup Network Services include: an interface to the UCSC browser, BLAST and BLAST+ services, and a tool for the creation of custom BLAST databases.
Services:
UCSC:
“SeqPup” includes a “UCSC” service for connecting to the UCSC Genome browser. “UCSC” is a tool for viewing genetic sequences in the UCSC Genome browser.
BLAST:
“SeqPup” includes a “BL 384a16bd22
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Make the easiest part of your job easy. With the code editor you can create code macros. Macros allow you to press one key in your keyboard to generate a text. GraphicMaster supports two types of code macros. Either macros, which allow you to run a function, and macro definitions, which allows you to define a list of functions.
How to use it:
Simply highlight the function that you would like to use in a plot and click on the icon marked “create macro.” The function gets highlighted. Click on the icon “save as” and save the code macro. This way you can now edit this code macro. On the right hand side you will see the list of macros.
Features:
Supports nested functions. It is not possible to nest a function that defines a function.
Recursive functions are supported. This means that you can write a function that calls another function.
Supports a very wide range of mathematical functions: Exponential, Logarithmic, Algebraic, Trigonometric, Hyperbolic and Cosine functions
Supports a lot of scientific data types, like numpy arrays and Pandas Series
For each function, you can set the start and the end values as well as the number of decimal places
Macro definitions can be saved, or shared with other programs
It is easy to export the data as an image (JPG, PDF and PNG)
Basic palette is available and supports over 40 color options
Export to html, png, pdf and xls files
Supports Windows 10 and Mac OSX (El Capitan is required)
Excel files can be exported as well
Some useful tips on the application:
• Double clicking on the function list, or the function editor in the main window opens the function.
• The y-axis of the Plot functions is inverted, so the maximum values are at the top.
• There is a short delay between pressing the Function list and the function getting plotted. This is due to the fact that the function needs to be rendered.
• You can save your plot in different formats, such as JPG, PNG, PDF and even HTML.
• If you have a graphics card, you can choose to cache the plots so that they are not being refreshed
• If you change the window resolution you will see a black screen for a few seconds
• It is possible to use the function editor for more functions
• In the main window
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